Got the CR-Z back with the update on the module software, don't know what exactly they did because I was not told details, but it cleared the TCM issue I had. I flashed the car with the Sprintex tune with Hondata and then I had a check engine light but no dash error which was weird. I saw no error codes from flashpro manager after datalogging, so I plugged in my OBD2 reader to clear the codes. The codes went away, and I started driving on the highway with no issue besides engine knock at very low stop and go revs from the beginning. But after driving it around more, I feel like the knocking went away, maybe because the car needs to relearn driving habits after all these software updates.
I forgot to mention that the belt tension level is on the upper level, I don't know if this is bad since I read you want it to settle in the middle line, but please let me know if it needs some adjustment. I also noticed some small amount of oil leaking from the vent plug base, or maybe it is from the dipstick, not sure. I'll be putting in an order for a vented hood since the Texas heat is getting very hot lately. I'll keep you guys updated on any other issues I may come across after installing the Sprintex.